s pneumoniae atcc 700669 (ATCC)

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Structured Review

ATCC s pneumoniae atcc 700669
S Pneumoniae Atcc 700669, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 320 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/s+pneumoniae+atcc+700669/Streptococcus+pneumoniae+(Klein)+Chester/pm42308351-351-1-3
Average 96 stars, based on 320 article reviews

s pneumoniae atcc 700669 - by Bioz Stars, 2026-10

96/100 stars

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Article Title: Streptococcus suis serotype 5: Emerging zoonotic threat with distinct genomic heterogeneity.
Article Snippet: The S. pneumoniae ATCC 700669 was used as an outgroup to root the tree.

Article Title: Streptococcus suis serotype 5: Emerging zoonotic threat with distinct genomic heterogeneity
Article Snippet: The S. pneumoniae ATCC 700669 was used as an outgroup to root the tree.

Article Title: The IL-17A/Neutrophil axis play a critical role in lethal infection induced by an emerging ultra-virulent Streptococcus suis serotype 5 strain.
Article Snippet: The S. pneumoniae ATCC 700669 was used as an outgroup to root the tree.

Generated:

Article Title: Genomic characterization of Streptococcus pneumoniae isolates obtained from carriage and disease among paediatric patients in Addis Ababa, Ethiopia
Article Snippet: .. Phylogenetic analysis was performed by constructing a maximum- likelihood tree using FastTree version 2.1.10 [ ] with General Time Reversible substitution model based on SNPs extracted from an alignment generated by mapping reads to the reference genome of S. pneumoniae ATCC 700669 (NCBI accession number FM211187) using Smalt (version 0.7.4; https://github.com/rcallahan/smalt ). ..

Article Title: Genomic characterization of Streptococcus pneumoniae isolates obtained from carriage and disease among paediatric patients in Addis Ababa, Ethiopia.
Article Snippet: .. Phylogenetic analysis was performed by constructing a maximum- likelihood tree using FastTree version 2.1.10 [38] with General Time Reversible substitution model based on SNPs extracted from an alignment generated by mapping reads to the reference genome of S. pneumoniae ATCC 700669 (NCBI accession number FM211187) using Smalt (version 0.7.4; https://github.com/rcallahan/smalt). ..

Variant Assay:

Article Title: Genomic analysis of the Streptococcus pneumoniae in Taiwan: a nationwide study from 2006 to 2022
Article Snippet: .. First, variant calling was performed by SKA2 v2 by mapping to a reference genome of S. pneumoniae ATCC 700669 [ ]. ..

In Silico:

Article Title: Reference-Free Variant Calling with Local Graph Construction with ska lo (SKA)
Article Snippet: .. To assess the performance of ska lo SNP calling, we built an in silico benchmark using the genome of S. pneumoniae ATCC 700669 and a fixed phylogeny to generate sets of 20 genomes with an increasing number of simulated variants (SNPs, short and long indels). ..

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